Overview

IDAllelesLocationGenome BuildSource
rs7657746A/Gchr4: 12224046438dbsnp146
rs7657746A/G chr4: 123161619 37dbsnp146_grch37
imm_4_123381069T/C chr4: 122240464 38ImmunoChip
imm_4_123381069T/C chr4: 123161619 37ImmunoChip
imm_4_123381069T/C chr4: 123381069 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17707026rs7657746rs7657746123
rs60553510rs7657746rs7657746130

Criteria

rs7657746 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs7657746 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  KIAA1109 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs7657746, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.