Overview

IDAllelesLocationGenome BuildSource
rs7804356T/Cchr7: 2685204638dbsnp146
rs7804356T/C chr7: 26891665 37dbsnp146_grch37
imm_7_26858190A/G chr7: 26852046 38ImmunoChip
imm_7_26858190A/G chr7: 26891665 37ImmunoChip
imm_7_26858190A/G chr7: 26858190 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs60290899rs7804356rs7804356130
rs10486482rs7804356rs7804356120
rs17376143rs7804356rs7804356123

Criteria

rs7804356 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs7804356 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  SKAP2 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs7804356, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.