Overview

IDAllelesLocationGenome BuildSource
rs7928968A/Tchr11: 202906938dbsnp146
rs7928968A/T chr11: 2050299 37dbsnp146_grch37
rs7928968T/A chr11: 2029069 38ImmunoChip
rs7928968T/A chr11: 2050299 37ImmunoChip
rs7928968T/A chr11: 2006875 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17658573rs7928968rs7928968123
rs56637999rs7928968rs7928968130
rs60421648rs7928968rs7928968130

Criteria

rs7928968 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs7928968 as derived from dbSNP:

    Study

    Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

    StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

    Populations

    Populations data from Ensembl 1000 Genome data release May 2013:

    Linkage Disequilibrium Statistics

    LD Search Options

    Linkage disequilibrium (LD) statistics are calculated for rs7928968, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.