Overview

IDAllelesLocationGenome BuildSource
rs79893749C/Tchr3: 4621215938dbsnp146
rs79893749C/T chr3: 46253650 37dbsnp146_grch37
imm_3_46228654A/G chr3: 46212159 38ImmunoChip
imm_3_46228654A/G chr3: 46253650 37ImmunoChip
imm_3_46228654A/G chr3: 46228654 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build

Criteria

rs79893749 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs79893749 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  CCR3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs79893749, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.