Overview

IDAllelesLocationGenome BuildSource
rs921720A/Gchr8: 12552242938dbsnp146
rs921720A/G chr8: 126534671 37dbsnp146_grch37
ccc-8-126603853-A-GT/C chr8: 125522429 38ImmunoChip
ccc-8-126603853-A-GT/C chr8: 126534671 37ImmunoChip
ccc-8-126603853-A-GT/C chr8: 126603853 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs117019944rs921720rs921720132
rs58771381rs921720rs921720130
rs61529304rs921720rs921720130

Criteria

rs921720 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs921720 as derived from dbSNP:
  • in intron

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs921720, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.