Overview

IDAllelesLocationGenome BuildSource
rs925255C/Tchr2: 2839192738dbsnp146
rs925255C/T chr2: 28614794 37dbsnp146_grch37
rs925255T/C chr2: 28391927 38ImmunoChip
rs925255T/C chr2: 28614794 37ImmunoChip
rs925255T/C chr2: 28468298 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs386621155rs925255rs925255142
rs60802663rs925255rs925255130

Criteria

rs925255 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs925255 as derived from dbSNP:
  • in 5prime gene region
  • in intron
Gene(s) at location of variation:  FOSL2  FLJ31356 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs925255, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.