Overview

IDAllelesLocationGenome BuildSource
rs9264942T/Cchr6: 3130660338dbsnp146
rs9264942T/C chr6: 31274380 37dbsnp146_grch37
rs9264942T/C chr6: 31306603 38ImmunoChip
rs9264942T/C chr6: 31274380 37ImmunoChip
rs9264942T/C chr6: 31382359 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs116392568rs9264942rs9264942136
rs117542211rs116392568rs9264942132
rs60947896rs9264942rs9264942130
rs79709508rs9264942rs9264942136

Criteria

rs9264942 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs9264942 as derived from dbSNP:
  • in 3prime gene region
  • in intron

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9264942, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.