Overview

IDAllelesLocationGenome BuildSource
rs9272346G/Achr6: 3263659538dbsnp146
rs9272346G/A chr6: 32604372 37dbsnp146_grch37
rs9272346T/C chr6: 32636595 38ImmunoChip
rs9272346T/C chr6: 32604372 37ImmunoChip
rs9272346T/C chr6: 32712350 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs34822775rs9272346rs9272346127
rs17840124rs9272346rs9272346123
rs79760765rs9272346rs9272346136
rs59711809rs9272346rs9272346130
rs111687693rs9272346rs9272346136
rs74223445rs9272346rs9272346136

Criteria

rs9272346 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs9272346 as derived from dbSNP:
  • in 5prime gene region
Gene(s) at location of variation:  HLA-DQA1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9272346, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.