Overview

IDAllelesLocationGenome BuildSource
rs934734G/Achr2: 6536845238dbsnp146
rs934734G/A chr2: 65595586 37dbsnp146_grch37
imm_2_65449090T/C chr2: 65368452 38ImmunoChip
imm_2_65449090T/C chr2: 65595586 37ImmunoChip
imm_2_65449090T/C chr2: 65449090 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs56647924rs934734rs934734130
rs17474980rs934734rs934734123
rs59701933rs934734rs934734130

Criteria

rs934734 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs934734 as derived from dbSNP:
  • in 5prime gene region
  • in intron
Gene(s) at location of variation:  SPRED2 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs934734, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.