Overview

IDAllelesLocationGenome BuildSource
rs9375435C/Tchr6: 12634071238dbsnp146
rs9375435C/T chr6: 126661858 37dbsnp146_grch37
imm_6_126703551T/C chr6: 126340712 38ImmunoChip
imm_6_126703551T/C chr6: 126661858 37ImmunoChip
imm_6_126703551T/C chr6: 126703551 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17754757rs9375435rs9375435123
rs13213963rs9375435rs9375435123

Criteria

rs9375435 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs9375435 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  CENPW 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9375435, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.