Overview

IDAllelesLocationGenome BuildSource
rs941576A/Gchr14: 10083970838dbsnp146
rs941576A/G chr14: 101306045 37dbsnp146_grch37
imm_14_100375798T/C chr14: 100839708 38ImmunoChip
imm_14_100375798T/C chr14: 101306045 37ImmunoChip
imm_14_100375798T/C chr14: 100375798 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17743200rs941576rs941576123
rs60202344rs941576rs941576130

Criteria

rs941576 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is in r2>0.8 with an index SNP 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs941576 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  MEG3 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs941576, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.