Overview

IDAllelesLocationGenome BuildSource
rs9847710T/Cchr3: 5302864538dbsnp146
rs9847710T/C chr3: 53062661 37dbsnp146_grch37
rs9847710T/C chr3: 53028645 38ImmunoChip
rs9847710T/C chr3: 53062661 37ImmunoChip
rs9847710T/C chr3: 53037701 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs58880409rs9847710rs9847710130

Criteria

rs9847710 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs9847710 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  SFMBT1 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9847710, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.