Overview

IDAllelesLocationGenome BuildSource
rs9924471G/Achr16: 2858020938dbsnp146
rs9924471G/A chr16: 28591530 37dbsnp146_grch37
imm_16_28499031A/G chr16: 28580209 38ImmunoChip
imm_16_28499031A/G chr16: 28591530 37ImmunoChip
imm_16_28499031A/G chr16: 28499031 36ImmunoChip

Jbrowse

Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs17841314rs9924471rs9924471123
rs59305556rs9924471rs9924471130
rs56414968rs9924471rs9924471130

Criteria

rs9924471 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is an index SNP in a Region 
Marker is GW-Significant in a Study 

Functional Information

Gene function properties for rs9924471 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  NPIPB8  SGF29 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9924471, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.