Overview

IDAllelesLocationGenome BuildSource
rs9967792T/Cchr2: 19110970938dbsnp146
rs9967792T/C chr2: 191974435 37dbsnp146_grch37
imm_2_191682680A/G chr2: 191109709 38ImmunoChip
imm_2_191682680A/G chr2: 191974435 37ImmunoChip
imm_2_191682680A/G chr2: 191682680 36ImmunoChip

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Historical Ids

Old Marker IDNew Marker IDCurrent Marker IDdbSNP Build
rs57016405rs9967792rs9967792130
rs57949789rs9967792rs9967792130

Criteria

rs9967792 meets the following criteria:

Criteria Name
Details
Disease Tags
Marker is GW-Significant in a Study 
Marker is an index SNP in a Region 

Functional Information

Gene function properties for rs9967792 as derived from dbSNP:
  • in intron
Gene(s) at location of variation:  STAT4 

Study

Studies containing regions of association that span this marker are shown below. Please note that when making comparisons across studies, that they may vary in terms of size, genotyping platform, and exclusion criteria. If the 'Odds Ratio' is less than 1 then the region is protective (alleles are marked as blue) otherwise it is susceptible (alleles marked as red).

StudyPublicationDiseaseRegionMarkerAllelesP-valueORMAFGene(s)

Populations

Populations data from Ensembl 1000 Genome data release May 2013:

Linkage Disequilibrium Statistics

LD Search Options

Linkage disequilibrium (LD) statistics are calculated for rs9967792, using the 1000 genomes data release May 2013. Calculations are performed with the snpStats R library, covering 1Mb either side of the marker; and with the following filters applied: MAF > 0.01, call rate < 0.9, and chi-squared test for deviation from HWE > 25.