Strain Information

Congenic strains have been created to help identify regions of the NOD genome involved in T1D by introgressing genetic material from different strains into the NOD mouse. To visualize the introgressed regions, we have developed a strain database. Select from the categories below to display strain information, such as strain name and its aliases, chromosomes, fine mapping markers, and the name of the regions.

Strain Name

Taconic Name

Chromosome

1 13 17 3 4

Marker

Region

All Strains

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1565
1566
2399
2410
2412
3538
3539
3700
6146
6359
6360
905
907
974
c3(A)
c3c4
NOD.129 Idd3
NOD.B10-H2b
NOD.B6 Idd10 Idd18R2
NOD.B6 Idd3 Idd10R20
NOD.B6Idd11A
NOD.B6Idd11B
NOD.B6Idd11C
NOD.B6Idd11D
NOD.B6Idd14
R1
R11
R135
R193
R2
R28
R3
R35
R444
R444 + R450
R450
R46
R467
R467 + R450
R93

1092
1094
1095
1098
1100
1101
1102
1104
1105
1106
1108
1112
1538
1565
1566
1573
2193
2399
2410
2412
2574
3538
3539
3700
6109
6146
6359
6360
905
907
974

2410_Micro_1
2410_p_SNP_5
AC093365_1
AC093365_6
AL606914(TGCA)
AL606963(TA)
AL645930.10.10
AL645930.10.2
AL671917_10
AL683823_12
AL683824_5
AL683824_5_1
AL845310_10
AL845310_13
Bq411m14-T7
Bq460g02
CD30-distal5
Clstn1-RE
D13Mit116
D13Mit151
D13Mit163
D1Mit101
D1Mit104
D1Mit124
D1Mit132
D1Mit134
D1Mit176
D1Mit179
D1Mit180
D1Mit181
D1Mit249
D1Mit267
D1Mit300
D1Mit303
D1Mit346
D1Mit380
D1Mit396
D1Mit478
D1Mit498
D1Mit5
D1Mit532
D1Mit77
D3Mit10
D3Mit12
D3Mit157
D3Mit167
D3Mit189
D3Mit213
D3Mit342
D3Mit370
D3Mit52
D3Mit65
D3Mit92
D3Mit93
D3Mit94
D3Nds32
D3Nds34
D3Nds36
D3Nds55
D3Nds76
D4Dil30
D4Dil31
D4Mit119
D4Mit127
D4Mit200
D4Mit203
D4Mit204
D4Mit233
D4Mit251
D4Mit258
D4Mit27
D4Mit28
D4Mit31
D4Mit338
D4Mit339
D4Mit42
D4Mit59
D4Mit69
D4Mit72
D4Nds25
Pik3cd-RE
RS30280887
RS30321818
RS30471359
RS38124092
bM70A7SSR18
bM70A7SSR19
cd28distal3
rs13482893
rs13482922
rs13483018
rs13483019

Idd5.1
Idd5.2
Idd9.1
Idd9.2
Idd9.3
Idd3
Idd10
Idd18
Idd17
Idd11
Idd14
Idd5.3
Idd5.4